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start [2015/03/26 10:17]
kthorn
start [2016/12/12 15:05]
kthorn
Line 13: Line 13:
   * [[N-SIM]]   * [[N-SIM]]
   * [[High Speed Scope]]   * [[High Speed Scope]]
-  * [[AZ100]]+  * [[AZ100]] ​(Light Sheet)
   * [[Other equipment and objectives]]   * [[Other equipment and objectives]]
  
Line 27: Line 27:
 === Microscopy References and Education === === Microscopy References and Education ===
  
-  * [[Books, Websites, etc.]] +  * [[websites|Books, Websites, etc.]]
-  * [[books]]+
   * [[presentations]]   * [[presentations]]
   * [[Microscopy Courses]]   * [[Microscopy Courses]]
-  * [[references]] 
   * [[NIC user guides]]   * [[NIC user guides]]
-  * [[Blogs]] 
  
 === Sample Preparation === === Sample Preparation ===
Line 53: Line 50:
   * [[Image Stitching in Micro-Manager|How to stich images acquired in Micro-Manager]]   * [[Image Stitching in Micro-Manager|How to stich images acquired in Micro-Manager]]
   * [[FlatFieldImageAcquisition|How to Acquire Flat Field correction images]]   * [[FlatFieldImageAcquisition|How to Acquire Flat Field correction images]]
-  * [[LEDcolorimaging|How to acquire color images with the RGB LED on the High Speed Microscope]] 
-  * {{:​large_image_stitching.docx|How to do background correction and large image stitching in ImageJ (OLD)}} 
  
 == Commercial Software available at the NIC == == Commercial Software available at the NIC ==
Line 70: Line 65:
   * [[http://​www.cellprofiler.org/​|CellProfiler]] - A free, open source image analysis tool designed for analysis of image-based screens.   * [[http://​www.cellprofiler.org/​|CellProfiler]] - A free, open source image analysis tool designed for analysis of image-based screens.
   * [[http://​code.google.com/​p/​iocbio/​wiki/​IOCBioMicroscope|IOCBioMicroscope]] - A free, open source Lucy-Richardson deconvolution tool, written in Python.   * [[http://​code.google.com/​p/​iocbio/​wiki/​IOCBioMicroscope|IOCBioMicroscope]] - A free, open source Lucy-Richardson deconvolution tool, written in Python.
-  * [[http://​code.google.com/​p/​pythonxy/​|python(x,​y)]] - A complete python package, including libraries and IDE, for scientific computing. 
   * [[http://​farsight-toolkit.org/​wiki/​Main_Page|Farsight Toolikit]] - Sophisticated packages for image alignment, segmentation,​ and neuron / vessel tracing, among other things.   * [[http://​farsight-toolkit.org/​wiki/​Main_Page|Farsight Toolikit]] - Sophisticated packages for image alignment, segmentation,​ and neuron / vessel tracing, among other things.
  
Line 79: Line 73:
   * [[PSFs|PSFs and aberrations]]   * [[PSFs|PSFs and aberrations]]
   * [[Consumables]]   * [[Consumables]]
-  * [[NIC_PCs|NIC PC Inventory]] 
   * [[Fab_resources|Outside fabrication resources]]   * [[Fab_resources|Outside fabrication resources]]
/var/www/html/dokuwiki/data/pages/start.txt · Last modified: 2017/07/11 11:30 by dlarsen