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imagej [2012/10/03 12:19]
kthorn
imagej [2015/04/16 16:57] (current)
kthorn
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 [[http://​rsbweb.nih.gov/​ij/​|ImageJ]] is one of the older free, open source image analysis programs. ​ Alone, it's not that powerful; it's real strength is the vast array of plugins for it.  It runs on Windows, Mac, and Linux. [[http://​rsbweb.nih.gov/​ij/​|ImageJ]] is one of the older free, open source image analysis programs. ​ Alone, it's not that powerful; it's real strength is the vast array of plugins for it.  It runs on Windows, Mac, and Linux.
  
-[[http://pacific.mpi-cbg.de/​wiki/​index.php/​Fiji|FIJI]] is probably the best disctribution ​of ImageJ for routine data analysis. ​ It comes with a vast array of plugins already installed and ready to use (including the three mentioned below) and has an automatic updater so you always have the latest versions of them.+[[http://fiji.sc|FIJI]] is probably the best distribution ​of ImageJ for routine data analysis. ​ It comes with a vast array of plugins already installed and ready to use (including the three mentioned below) and has an automatic updater so you always have the latest versions of them.
  
 [[http://​www.micro-manager.org/​|Micro-Manager]] is a microscope control package that is built on top of ImageJ. ​ It's developed at UCSF and is very powerful; we use it to control the Spinning Disk Confocal in the Nikon Imaging Center. [[http://​www.micro-manager.org/​|Micro-Manager]] is a microscope control package that is built on top of ImageJ. ​ It's developed at UCSF and is very powerful; we use it to control the Spinning Disk Confocal in the Nikon Imaging Center.
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 === Learning === === Learning ===
-{{:​image_analysis_lab_manual.pdf|Here is a self-guided tutorial on image processing in ImageJ/​Fiji}}.  [[http://​nic.ucsf.edu/​Images.zip|The files for it are located here]].+{{:​image_analysis_lab_manual.pdf|Here is a self-guided tutorial on image processing in ImageJ/​Fiji}}. ​
  
 === Miscellaneous === === Miscellaneous ===
 If you do a lot of work with ImageJ, you may want to subscribe to the ImageJ mailing list: http://​rsbweb.nih.gov/​ij/​list.html If you do a lot of work with ImageJ, you may want to subscribe to the ImageJ mailing list: http://​rsbweb.nih.gov/​ij/​list.html
/var/www/html/dokuwiki/data/attic/imagej.1349291976.txt.gz · Last modified: 2012/10/03 07:19 (external edit)