Paper Roundup – June 2015

  • Quantification of cell cycle state for tumor xenografts using in vivo imaging and computational image analysis [1]
  • Automated imaging and analysis of the yeast proteome [2]
  • A review of fluorogenic protein labeling [3]
  • Fluorescent proteins containing multiple copies of an epitope tag as bright immunofluorescence targets [4]
  • Using uptake of multiple dyes to map neuronal projections [5]
  • A review of correlative light and electron microscopy [6]
  • A review of novel fluorescent protein technologies [7]
  • A swept-focus light sheet microscope, using a cylindrical lens to generate a light sheet whose focus is swept through the sample [8]
  • A nice review of different commercial SIM implementations [9]
  • An open-top SPIM system for imaging samples in plates or in microfluidic devices [10]
  • A review of LOV-based reporters for fluorescence imaging [11]
  • A protocol for fixing yeast for single molecule localization microscopy [12]
  • A review of near-infrared fluorescent proteins [13]

References

  1. D.R. Chittajallu, S. Florian, R.H. Kohler, Y. Iwamoto, J.D. Orth, R. Weissleder, G. Danuser, and T.J. Mitchison, "In vivo cell-cycle profiling in xenograft tumors by quantitative intravital microscopy", Nature Methods, vol. 12, pp. 577-585, 2015. http://dx.doi.org/10.1038/nmeth.3363
  2. Y. Chong, J. Koh, H. Friesen, S. Kaluarachchi Duffy, M. Cox, A. Moses, J. Moffat, C. Boone, and B. Andrews, "Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis", Cell, vol. 161, pp. 1413-1424, 2015. http://dx.doi.org/10.1016/j.cell.2015.04.051
  3. M.P. Bruchez, "Dark dyes–bright complexes: fluorogenic protein labeling", Current Opinion in Chemical Biology, vol. 27, pp. 18-23, 2015. http://dx.doi.org/10.1016/j.cbpa.2015.05.014
  4. S. Viswanathan, M.E. Williams, E.B. Bloss, T.J. Stasevich, C.M. Speer, A. Nern, B.D. Pfeiffer, B.M. Hooks, W. Li, B.P. English, T. Tian, G.L. Henry, J.J. Macklin, R. Patel, C.R. Gerfen, X. Zhuang, Y. Wang, G.M. Rubin, and L.L. Looger, "High-performance probes for light and electron microscopy", Nature Methods, vol. 12, pp. 568-576, 2015. http://dx.doi.org/10.1038/nmeth.3365
  5. S. Tsuriel, S. Gudes, R.W. Draft, A.M. Binshtok, and J.W. Lichtman, "Multispectral labeling technique to map many neighboring axonal projections in the same tissue", Nature Methods, vol. 12, pp. 547-552, 2015. http://dx.doi.org/10.1038/nmeth.3367
  6. P. de Boer, J.P. Hoogenboom, and B.N.G. Giepmans, "Correlated light and electron microscopy: ultrastructure lights up!", Nature Methods, vol. 12, pp. 503-513, 2015. http://dx.doi.org/10.1038/nmeth.3400
  7. J.R. Enterina, L. Wu, and R.E. Campbell, "Emerging fluorescent protein technologies", Current Opinion in Chemical Biology, vol. 27, pp. 10-17, 2015. http://dx.doi.org/10.1016/j.cbpa.2015.05.001
  8. K. Dean, P. Roudot, E. Welf, G. Danuser, and R. Fiolka, "Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy", Biophysical Journal, vol. 108, pp. 2807-2815, 2015. http://dx.doi.org/10.1016/j.bpj.2015.05.013
  9. K. Marno, L. Al’Zoubi, M. Pearson, M. Posch, . McKnight, and A.P. Wheeler, "The evolution of structured illumination microscopy in studies of HIV", Methods, vol. 88, pp. 20-27, 2015. http://dx.doi.org/10.1016/j.ymeth.2015.06.007
  10. R. McGorty, H. Liu, D. Kamiyama, Z. Dong, S. Guo, and B. Huang, "Open-top selective plane illumination microscope for conventionally mounted specimens", Optics Express, vol. 23, pp. 16142, 2015. http://dx.doi.org/10.1364/OE.23.016142
  11. A.M. Buckley, J. Petersen, A.J. Roe, G.R. Douce, and J.M. Christie, "LOV-based reporters for fluorescence imaging", Current Opinion in Chemical Biology, vol. 27, pp. 39-45, 2015. http://dx.doi.org/10.1016/j.cbpa.2015.05.011
  12. C. Kaplan, and H. Ewers, "Optimized sample preparation for single-molecule localization-based superresolution microscopy in yeast", Nature Protocols, vol. 10, pp. 1007-1021, 2015. http://dx.doi.org/10.1038/nprot.2015.060
  13. D.M. Shcherbakova, M. Baloban, and V.V. Verkhusha, "Near-infrared fluorescent proteins engineered from bacterial phytochromes", Current Opinion in Chemical Biology, vol. 27, pp. 52-63, 2015. http://dx.doi.org/10.1016/j.cbpa.2015.06.005